Database Commons a catalog of biological databases

Database Commons - ICGC

ICGC

Citations: 80

z-index 0.00

Short name ICGC
Full name International Cancer Genome Consortium Data Portal
Description ICGC has received commitments from funding organizations in Asia, Australia, Europe, North America and South America for 88 project teams in 17 jurisdictions to study over 25,000 tumor genomes
URL https://dcc.icgc.org/
Year founded 2011
Last update & version 2015-06-16    V1.0
Availability Free to all users
University/Institution hosted Ontario Institute for Cancer Research
Address Toronto,Ontario M5G 0A3,Canada
City Toronto
Province/State
Country/Region Canada
Contact name Arek Kasprzyk
Contact email arek.kasprzyk@gmail.com
Data type(s)
Major organism(s)
Keyword(s)
  • common patterns of mutation
Publication(s)
  • International Cancer Genome Consortium Data Portal--a one-stop shop for cancer genomics data. [PMID: 21930502]

    Junjun Zhang, Joachim Baran, A Cros, Jonathan M Guberman, Syed Haider, Jack Hsu, Yong Liang, Elena Rivkin, Jianxin Wang, Brett Whitty, Marie Wong-Erasmus, Long Yao, Arek Kasprzyk
    Database : the journal of biological databases and curation 2011:2011
    80 Citations (Google Scholar as of 2016-01-22)

    Abstract: The International Cancer Genome Consortium (ICGC) is a collaborative effort to characterize genomic abnormalities in 50 different cancer types. To make this data available, the ICGC has created the ICGC Data Portal. Powered by the BioMart software, the Data Portal allows each ICGC member institution to manage and maintain its own databases locally, while seamlessly presenting all the data in a single access point for users. The Data Portal currently contains data from 24 cancer projects, including ICGC, The Cancer Genome Atlas (TCGA), Johns Hopkins University, and the Tumor Sequencing Project. It consists of 3478 genomes and 13 cancer types and subtypes. Available open access data types include simple somatic mutations, copy number alterations, structural rearrangements, gene expression, microRNAs, DNA methylation and exon junctions. Additionally, simple germline variations are available as controlled access data. The Data Portal uses a web-based graphical user interface (GUI) to offer researchers multiple ways to quickly and easily search and analyze the available data. The web interface can assist in constructing complicated queries across multiple data sets. Several application programming interfaces are also available for programmatic access. Here we describe the organization, functionality, and capabilities of the ICGC Data Portal.

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Tags

DNA
Homo sapiens
common patterns of mutation

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Chunlei Yu [2016-03-31]
    • Chunlei Yu [2015-11-19]
    • Chunlei Yu [2015-06-29]
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