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Database Commons - The strategies WDK

The strategies WDK

Citations: 9

z-index 0.99

Short name The strategies WDK
Full name
Description a graphical search interface and web development kit for functional genomics databases
URL http://www.eupathdb.org/eupathdb/
Year founded 2011
Last update & version 4/14/2015    V24
Availability Free to all users
University/Institution hosted University of Pennsylvania
Address NA
City Philadelphia
Province/State PA
Country/Region United States
Contact name Steve Fischer
Contact email sfischer@pcbi.upenn.edu
Data type(s)
Major organism(s)
Keyword(s)
  • dynamic computational experiment
Publication(s)
  • The Strategies WDK: a graphical search interface and web development kit for functional genomics databases. [PMID: 21705364]

    Steve Fischer, Cristina Aurrecoechea, Brian P Brunk, Xin Gao, Omar S Harb, Eileen T Kraemer, Cary Pennington, Charles Treatman, Jessica C Kissinger, David S Roos, Christian J Stoeckert
    Database : the journal of biological databases and curation 2011:2011
    9 Citations (Google Scholar as of 2016-01-23)

    Abstract: Web sites associated with the Eukaryotic Pathogen Bioinformatics Resource Center (EuPathDB.org) have recently introduced a graphical user interface, the Strategies WDK, intended to make advanced searching and set and interval operations easy and accessible to all users. With a design guided by usability studies, the system helps motivate researchers to perform dynamic computational experiments and explore relationships across data sets. For example, PlasmoDB users seeking novel therapeutic targets may wish to locate putative enzymes that distinguish pathogens from their hosts, and that are expressed during appropriate developmental stages. When a researcher runs one of the approximately 100 searches available on the site, the search is presented as a first step in a strategy. The strategy is extended by running additional searches, which are combined with set operators (union, intersect or minus), or genomic interval operators (overlap, contains). A graphical display uses Venn diagrams to make the strategy's flow obvious. The interface facilitates interactive adjustment of the component searches with changes propagating forward through the strategy. Users may save their strategies, creating protocols that can be shared with colleagues. The strategy system has now been deployed on all EuPathDB databases, and successfully deployed by other projects. The Strategies WDK uses a configurable MVC architecture that is compatible with most genomics and biological warehouse databases, and is available for download at code.google.com/p/strategies-wdk. Database URL: www.eupathdb.org.

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Accessibility

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200 OK2018-01-12
-1 Failed2018-01-09
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200 OK2017-12-29
200 OK2017-12-26
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200 OK2017-12-19
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200 OK2017-12-12
200 OK2017-12-08
200 OK2017-12-05
200 OK2017-12-01
200 OK2017-11-28
200 OK2017-11-24
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200 OK2017-11-14
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200 OK2017-11-07
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-1 Failed2017-10-10
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200 OK2017-02-17
200 OK2017-02-14
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200 OK2017-02-03
200 OK2017-01-31
200 OK2017-01-27
200 OK2017-01-24
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200 OK2016-12-13
200 OK2016-12-09
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200 OK2016-11-29
200 OK2016-11-25
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200 OK2016-11-08
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200 OK2016-10-07
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200 OK2016-07-29
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200 OK2016-07-15
200 OK2016-07-12
200 OK2016-07-08
200 OK2016-07-05
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200 OK2016-06-28
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200 OK2016-06-17
200 OK2016-06-14
200 OK2016-06-10
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200 OK2016-05-27
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200 OK2016-05-17
200 OK2016-05-13
200 OK2016-05-10
200 OK2016-05-06
200 OK2016-05-03
200 OK2016-04-29
200 OK2016-04-26
200 OK2016-04-22
200 OK2016-04-19
200 OK2016-04-15
200 OK2016-04-12
200 OK2016-04-08
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200 OK2016-03-29
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200 OK2016-02-15
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200 OK2016-02-08
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200 OK2016-02-01
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200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
200 OK2016-01-24
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200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
200 OK2016-01-11
200 OK2016-01-10
200 OK2016-01-08
200 OK2016-01-06
200 OK2016-01-04

Tags

DNA Expression RNA
Eukaryotic pathogen
dynamic computational experiment

Record metadata

  • Created on: 2015-06-20
  • Last updated: 2015-06-21
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