Database Commons a catalog of biological databases

Database Commons - BioModels

BioModels

Citations: 23

z-index 7.67

Short name BioModels
Full name
Description BioModels Database is a repository of computational models of biological processes.
URL http://www.ebi.ac.uk/biomodels-main/
Year founded 2004
Last update & version 2015-5    v1.0
Availability Free to all users
University/Institution hosted European Bioinformatics Institute
Address Hinxton, Cambridge CB10 1SD, UK
City Cambridge
Province/State
Country/Region United Kingdom
Contact name Vijayalakshmi Chelliah
Contact email viji@ebi.ac.uk
Data type(s)
Major organism(s)
Keyword(s)
  • biological process
  • computational model
Publication(s)
  • BioModels: ten-year anniversary. [PMID: 25414348]

    Vijayalakshmi Chelliah, Nick Juty, Ishan Ajmera, Raza Ali, Marine Dumousseau, Mihai Glont, Michael Hucka, Gaël Jalowicki, Sarah Keating, Vincent Knight-Schrijver, Audald Lloret-Villas, Kedar Nath Natarajan, Jean-Baptiste Pettit, Nicolas Rodriguez, Michael Schubert, Sarala M Wimalaratne, Yangyang Zhao, Henning Hermjakob, Nicolas Le Novère, Camille Laibe
    Nucleic acids research 2015:43(Database issue)
    23 Citations (Google Scholar as of 2016-03-29)

    Abstract: BioModels (http://www.ebi.ac.uk/biomodels/) is a repository of mathematical models of biological processes. A large set of models is curated to verify both correspondence to the biological process that the model seeks to represent, and reproducibility of the simulation results as described in the corresponding peer-reviewed publication. Many models submitted to the database are annotated, cross-referencing its components to external resources such as database records, and terms from controlled vocabularies and ontologies. BioModels comprises two main branches: one is composed of models derived from literature, while the second is generated through automated processes. BioModels currently hosts over 1200 models derived directly from the literature, as well as in excess of 140,000 models automatically generated from pathway resources. This represents an approximate 60-fold growth for literature-based model numbers alone, since BioModels' first release a decade ago. This article describes updates to the resource over this period, which include changes to the user interface, the annotation profiles of models in the curation pipeline, major infrastructure changes, ability to perform online simulations and the availability of model content in Linked Data form. We also outline planned improvements to cope with a diverse array of new challenges. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Accessibility

Rate of accessibility:
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200 OK2017-12-26
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200 OK2017-12-12
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200 OK2017-11-14
200 OK2017-11-10
200 OK2017-11-07
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200 OK2017-10-31
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200 OK2017-10-24
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200 OK2017-10-13
200 OK2017-10-10
200 OK2017-10-06
200 OK2017-10-03
200 OK2017-09-29
200 OK2017-09-26
200 OK2017-09-22
200 OK2017-09-19
200 OK2017-09-15
200 OK2017-09-12
200 OK2017-09-08
200 OK2017-09-05
200 OK2017-09-01
200 OK2017-08-29
200 OK2017-08-25
200 OK2017-08-22
200 OK2017-08-18
200 OK2017-08-15
200 OK2017-08-11
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200 OK2017-08-04
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200 OK2017-07-25
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200 OK2017-07-18
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200 OK2017-03-03
200 OK2017-02-28
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200 OK2017-02-21
200 OK2017-02-17
200 OK2017-02-14
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200 OK2017-02-07
200 OK2017-02-03
200 OK2017-01-31
200 OK2017-01-27
200 OK2017-01-24
200 OK2017-01-20
200 OK2017-01-17
200 OK2017-01-13
200 OK2017-01-10
200 OK2017-01-06
200 OK2017-01-03
200 OK2016-12-30
200 OK2016-12-27
200 OK2016-12-23
200 OK2016-12-20
200 OK2016-12-16
200 OK2016-12-13
200 OK2016-12-09
200 OK2016-12-06
200 OK2016-12-02
200 OK2016-11-29
200 OK2016-11-25
200 OK2016-11-22
200 OK2016-11-18
200 OK2016-11-15
200 OK2016-11-11
200 OK2016-11-08
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200 OK2016-10-21
200 OK2016-10-18
200 OK2016-10-14
200 OK2016-10-11
200 OK2016-10-07
200 OK2016-10-04
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200 OK2016-09-27
200 OK2016-09-23
200 OK2016-09-20
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200 OK2016-09-13
200 OK2016-09-09
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200 OK2016-08-16
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200 OK2016-08-09
200 OK2016-08-05
200 OK2016-08-02
200 OK2016-07-29
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200 OK2016-07-22
200 OK2016-07-19
200 OK2016-07-15
200 OK2016-07-12
200 OK2016-07-08
200 OK2016-07-05
200 OK2016-07-01
200 OK2016-06-28
200 OK2016-06-24
200 OK2016-06-21
200 OK2016-06-17
200 OK2016-06-14
200 OK2016-06-10
200 OK2016-06-07
200 OK2016-06-03
200 OK2016-05-31
200 OK2016-05-27
200 OK2016-05-24
200 OK2016-05-20
200 OK2016-05-17
200 OK2016-05-13
200 OK2016-05-10
200 OK2016-05-06
200 OK2016-05-03
200 OK2016-04-29
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200 OK2016-04-22
200 OK2016-04-19
200 OK2016-04-15
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200 OK2016-04-08
200 OK2016-04-05
200 OK2016-04-01
200 OK2016-03-29
200 OK2016-03-28
200 OK2016-03-25
200 OK2016-03-23
200 OK2016-03-21
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200 OK2016-03-14
200 OK2016-03-11
200 OK2016-03-09
200 OK2016-03-07
200 OK2016-03-04
200 OK2016-03-02
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200 OK2016-02-15
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200 OK2016-02-05
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200 OK2016-01-31
200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
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200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
200 OK2016-01-11
200 OK2016-01-10
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200 OK2016-01-04

Tags

Metabolic and Signaling Pathway
biological process computational model

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Mengwei Li [2016-03-31]
    • Mengwei Li [2016-03-29]
    • Mengwei Li [2016-02-21]
    • Mengwei Li [2016-02-18]
    • Mengwei Li [2015-11-29]
    • Mengwei Li [2015-06-26]
Stats