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Database Commons - GnpIS

GnpIS

Citations: 9

z-index 0.38

Short name GnpIS
Full name Genetic and Genomic Information System
Description GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information and genomic data for species of agronomical interest.
URL https://urgi.versailles.inra.fr/gnpis/
Year founded 2013
Last update & version 2016-03-07    v1.0
Availability Free to all users
University/Institution hosted INRA de Versailles
Address INRA de Versailles,Route de Saint-Cyr,Versailles,78026,France
City Versailles
Province/State
Country/Region France
Contact name Hadi Quesneville
Contact email hadi.quesneville@versailles.inra.fr
Data type(s)
Major organism(s)
Keyword(s)
  • genome annotation
Publication(s)
  • GnpIS: an information system to integrate genetic and genomic data from plants and fungi. [PMID: 23959375]

    Delphine Steinbach, Michael Alaux, Joelle Amselem, Nathalie Choisne, Sophie Durand, Raphaël Flores, Aminah-Olivia Keliet, Erik Kimmel, Nicolas Lapalu, Isabelle Luyten, Célia Michotey, Nacer Mohellibi, Cyril Pommier, Sébastien Reboux, Dorothée Valdenaire, Daphné Verdelet, Hadi Quesneville
    Database : the journal of biological databases and curation 2013:2013
    9 Citations (Google Scholar as of 2016-02-27)

    Abstract: Data integration is a key challenge for modern bioinformatics. It aims to provide biologists with tools to explore relevant data produced by different studies. Large-scale international projects can generate lots of heterogeneous and unrelated data. The challenge is to integrate this information with other publicly available data. Nucleotide sequencing throughput has been improved with new technologies; this increases the need for powerful information systems able to store, manage and explore data. GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. Here, we illustrate its use. Database URL: http://urgi.versailles.inra.fr/gnpis.

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Tags

DNA Expression RNA
Fungus Plant
genome annotation

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Zhang Zhang [2016-04-26]
    • Lin Liu [2016-03-26]
    • Jian Sang [2015-12-05]
    • Jian Sang [2015-06-28]
Stats