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Database Commons - GenoBase

GenoBase

Citations: 5

z-index 0.52

Short name GenoBase
Full name Escherichia coli K-12 Resource Database
Description GenoBase contains key information about comprehensive experimental resources of E. coli K-12, their quality control and several omics data sets generated using these resources.
URL http://ecoli.naist.jp/GB/
Year founded 1994
Last update & version 2015-01-01    
Availability Free to academic users only
University/Institution hosted Nara Institute of Science and Technology
Address Ikoma,Nara 630Ð0101,Japan
City Ikoma
Province/State
Country/Region Japan
Contact name Hirotada Mori
Contact email hmori@gtc.naist.jp
Data type(s)
Major organism(s)
Keyword(s)
  • experimental resource
Publication(s)
  • GenoBase: comprehensive resource database of Escherichia coli K-12. [PMID: 25399415]

    Yuta Otsuka, Ai Muto, Rikiya Takeuchi, Chihiro Okada, Motokazu Ishikawa, Koichiro Nakamura, Natsuko Yamamoto, Hitomi Dose, Kenji Nakahigashi, Shigeki Tanishima, Sivasundaram Suharnan, Wataru Nomura, Toru Nakayashiki, Walid G Aref, Barry R Bochner, Tyrrell Conway, Michael Gribskov, Daisuke Kihara, Kenneth E Rudd, Yukako Tohsato, Barry L Wanner, Hirotada Mori
    Nucleic acids research 2015:43(Database issue)
    5 Citations (Google Scholar as of 2016-03-25)

    Abstract: Comprehensive experimental resources, such as ORFeome clone libraries and deletion mutant collections, are fundamental tools for elucidation of gene function. Data sets by omics analysis using these resources provide key information for functional analysis, modeling and simulation both in individual and systematic approaches. With the long-term goal of complete understanding of a cell, we have over the past decade created a variety of clone and mutant sets for functional genomics studies of Escherichia coli K-12. We have made these experimental resources freely available to the academic community worldwide. Accordingly, these resources have now been used in numerous investigations of a multitude of cell processes. Quality control is extremely important for evaluating results generated by these resources. Because the annotation has been changed since 2005, which we originally used for the construction, we have updated these genomic resources accordingly. Here, we describe GenoBase (http://ecoli.naist.jp/GB/), which contains key information about comprehensive experimental resources of E. coli K-12, their quality control and several omics data sets generated using these resources. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Tags

Metadata
Escherichia coli
experimental resource

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Lin Liu [2016-03-29]
    • Lin Liu [2016-03-25]
    • Jian Sang [2015-12-05]
    • Jian Sang [2015-06-28]
Stats