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Database Commons - TrypanoCyc

TrypanoCyc

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Short name TrypanoCyc
Full name Trypanosoma brucei Database
Description Trypanocyc is a community annotated Pathway/Genome Database of Trypanosoma brucei, the causative agent of African Trypanosomiasis.
URL http://www.metexplore.fr/trypanocyc/
Year founded 2014
Last update & version 2014-10-04    v1.0
Availability Free to all users
University/Institution hosted University of Toulouse
Address Institut National de la Recherche Agronomique (INRA),UMR1331 , TOXALIM (Research Centre in Food Toxicology), Université de Toulouse, Toulouse, France
City Toulouse
Province/State
Country/Region France
Contact name Fabien Jourdan
Contact email Fabien.Jourdan@toulouse.inra.fr
Data type(s)
Major organism(s)
Keyword(s)
  • metabolic network
  • trypanosoma brucei
Publication(s)
  • TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. [PMID: 25300491]

    Sanu Shameer, Flora J Logan-Klumpler, Florence Vinson, Ludovic Cottret, Benjamin Merlet, Fiona Achcar, Michael Boshart, Matthew Berriman, Rainer Breitling, Frédéric Bringaud, Peter Bütikofer, Amy M Cattanach, Bridget Bannerman-Chukualim, Darren J Creek, Kathryn Crouch, Harry P de Koning, Hubert Denise, Charles Ebikeme, Alan H Fairlamb, Michael A J Ferguson, Michael L Ginger, Christiane Hertz-Fowler, Eduard J Kerkhoven, Pascal Mäser, Paul A M Michels, Archana Nayak, David W Nes, Derek P Nolan, Christian Olsen, Fatima Silva-Franco, Terry K Smith, Martin C Taylor, Aloysius G M Tielens, Michael D Urbaniak, Jaap J van Hellemond, Isabel M Vincent, Shane R Wilkinson, Susan Wyllie, Fred R Opperdoes, Michael P Barrett, Fabien Jourdan
    Nucleic acids research 2015:43(Database issue)
    Citation (to be updated)

    Abstract: The metabolic network of a cell represents the catabolic and anabolic reactions that interconvert small molecules (metabolites) through the activity of enzymes, transporters and non-catalyzed chemical reactions. Our understanding of individual metabolic networks is increasing as we learn more about the enzymes that are active in particular cells under particular conditions and as technologies advance to allow detailed measurements of the cellular metabolome. Metabolic network databases are of increasing importance in allowing us to contextualise data sets emerging from transcriptomic, proteomic and metabolomic experiments. Here we present a dynamic database, TrypanoCyc (http://www.metexplore.fr/trypanocyc/), which describes the generic and condition-specific metabolic network of Trypanosoma brucei, a parasitic protozoan responsible for human and animal African trypanosomiasis. In addition to enabling navigation through the BioCyc-based TrypanoCyc interface, we have also implemented a network-based representation of the information through MetExplore, yielding a novel environment in which to visualise the metabolism of this important parasite. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Accessibility

Rate of accessibility:
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200 OK2018-01-02
200 OK2017-12-29
200 OK2017-12-26
200 OK2017-12-22
200 OK2017-12-19
200 OK2017-12-15
200 OK2017-12-12
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200 OK2017-12-01
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200 OK2017-11-24
200 OK2017-11-21
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200 OK2017-11-10
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200 OK2016-10-21
200 OK2016-10-18
200 OK2016-10-14
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200 OK2016-10-07
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200 OK2016-08-09
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200 OK2016-07-29
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200 OK2016-07-19
200 OK2016-07-15
200 OK2016-07-12
200 OK2016-07-08
200 OK2016-07-05
200 OK2016-07-01
200 OK2016-06-28
200 OK2016-06-24
200 OK2016-06-21
200 OK2016-06-17
200 OK2016-06-14
200 OK2016-06-10
200 OK2016-06-07
200 OK2016-06-03
200 OK2016-05-31
200 OK2016-05-27
200 OK2016-05-24
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200 OK2016-05-17
200 OK2016-05-13
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200 OK2016-03-29
200 OK2016-03-28
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200 OK2016-03-21
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200 OK2016-03-09
200 OK2016-03-07
200 OK2016-03-04
200 OK2016-03-02
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200 OK2016-02-15
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200 OK2016-02-05
200 OK2016-02-03
200 OK2016-02-01
200 OK2016-01-31
200 OK2016-01-29
200 OK2016-01-27
200 OK2016-01-25
200 OK2016-01-24
200 OK2016-01-22
200 OK2016-01-20
200 OK2016-01-18
200 OK2016-01-17
200 OK2016-01-15
200 OK2016-01-13
200 OK2016-01-11
200 OK2016-01-10
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200 OK2016-01-06
200 OK2016-01-04

Tags

Interaction and Network Protein
Trypanosoma brucei
metabolic network trypanosoma brucei

Record metadata

  • Created on: 2015-06-20
  • Curated by:
    • Guangyu Wang [2016-04-15]
    • Mengwei Li [2016-02-15]
    • Guangyu Wang [2015-12-06]
    • Guangyu Wang [2015-06-26]
Stats