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Database Commons - NGS catalog

NGS catalog

Citations: 23

z-index 0.69

Short name NGS catalog
Full name A Database of Next Generation Sequencing Studies in Humans
Description Next Generation Sequencing Catalog, a continually updated database that collects, curates and manages available human NGS data obtained from published literature.
URL http://bioinfo.mc.vanderbilt.edu/NGS/index.html
Year founded 2012
Last update & version 2012-04-19    v1.0
Availability Free to all users
University/Institution hosted Vanderbilt University
Address Nashville, TN 37203, USA
City Nashville
Province/State TN
Country/Region United States
Contact name Zhongming Zhao
Contact email zhongming.zhao@vanderbilt.edu
Data type(s)
Major organism(s)
Keyword(s)
  • NGS
  • RNA-seq
Publication(s)
  • NGS catalog: A database of next generation sequencing studies in humans. [PMID: 22517761]

    Junfeng Xia, Qingguo Wang, Peilin Jia, Bing Wang, William Pao, Zhongming Zhao
    Human mutation 2012:33(6)
    23 Citations (Google Scholar as of 2016-01-27)

    Abstract: Next generation sequencing (NGS) technologies have been rapidly applied in biomedical and biological research since its advent only a few years ago, and they are expected to advance at an unprecedented pace in the following years. To provide the research community with a comprehensive NGS resource, we have developed the database Next Generation Sequencing Catalog (NGS Catalog, http://bioinfo.mc.vanderbilt.edu/NGS/index.html), a continually updated database that collects, curates and manages available human NGS data obtained from published literature. NGS Catalog deposits publication information of NGS studies and their mutation characteristics (SNVs, small insertions/deletions, copy number variations, and structural variants), as well as mutated genes and gene fusions detected by NGS. Other functions include user data upload, NGS general analysis pipelines, and NGS software. NGS Catalog is particularly useful for investigators who are new to NGS but would like to take advantage of these powerful technologies for their own research. Finally, based on the data deposited in NGS Catalog, we summarized features and findings from whole exome sequencing, whole genome sequencing, and transcriptome sequencing studies for human diseases or traits. © 2012 Wiley Periodicals, Inc.

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Tags

DNA RNA
Homo sapiens
NGS RNA-seq

Record metadata

  • Created on: 2015-06-30
  • Curated by:
    • Zhang Zhang [2016-04-26]
    • Lin Liu [2016-03-28]
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